Research workbench
Structure of unliganded PIF1 from bacteroides sp
Analyse Structure of unliganded PIF1 from bacteroides sp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5FHG
- Type
- protein
- Length
- 734 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- D1JM21
- Pockets
- 6 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 29% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 426 | 33% helix, 24% strand | D1JM21 |
| B | Uncharacterized protein | protein | 308 | 24% helix, 31% strand | D1JM21 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 991 | 0.80 | 0.81 | 101 | empty |
| 2 | 836 | 0.68 | 0.74 | 83 | empty |
| 3 | 442 | 0.66 | 0.78 | 43 | empty |
| 4 | 119 | 0.49 | 0.79 | 21 | empty |
| 5 | 89 | 0.42 | 0.78 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 361 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5FHG · Structure of unliganded Pif1 from Bacteroides sp · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1JM21
- Elsewhere: RCSB PDB 5FHG · PDBe 5FHG · UniProt D1JM21
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