Research workbench
Crystal structure of the bacteriophage PHI29 tail knob protein GP9
Analyse Crystal structure of the bacteriophage PHI29 tail knob protein GP9 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5FB5
- Type
- protein
- Length
- 1,140 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Distal tube protein
- UniProt
- P04331
- Pockets
- 11 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Distal tube protein | protein | 564 | 18% helix, 34% strand | P04331 |
| B | Distal tube protein | protein | 576 | 17% helix, 33% strand | P04331 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 575 | 0.82 | 0.88 | 69 | empty |
| 2 | 1001 | 0.79 | 0.81 | 100 | empty |
| 3 | 372 | 0.63 | 0.78 | 58 | empty |
| 4 | 325 | 0.62 | 0.79 | 39 | empty |
| 5 | 184 | 0.61 | 0.83 | 39 | empty |
Interfaces
1 interface between chains.
- A–B · 4654 Ų buried · 52 hydrogen bonds · protein-protein
Compared structures
- 5FB5 · Crystal structure of the bacteriophage phi29 tail knob protein gp9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04331
- Elsewhere: RCSB PDB 5FB5 · PDBe 5FB5 · UniProt P04331
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