Research workbench
Crystal structure of sapharca inaequivalvis hbi, I114M mutant ligated to carbon monoxide.
Analyse Crystal structure of sapharca inaequivalvis hbi, I114M mutant ligated to carbon… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JZL
- Type
- protein
- Length
- 290 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Globin I - ark shell
- UniProt
- P02213
- Ligands
- HEM, CMO
- Pockets
- 1 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Globin I - ark shell | protein | 145 | 81% helix, 0% strand | P02213 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- CMO · Carbon monoxide · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 846 | 0.86 | 0.88 | 69 | HEM, CMO |
Interfaces
1 interface between chains.
- A–B · 961 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 1JZL · Crystal structure of Sapharca inaequivalvis HbI, I114M mutant ligated to carbon monoxide. · the same entry in another collection · chain A against A, TM-score 1.00
- P02213 · AlphaFold monomer V2.0 prediction for globin-1 (P02213) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02213
- Elsewhere: RCSB PDB 1JZL · PDBe 1JZL · UniProt P02213
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