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Cycloalternan-forming enzyme from listeria monocytogenes in complex with pentasaccharide substrate

Analyse Cycloalternan-forming enzyme from listeria monocytogenes in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5F7U
Type: protein
Length: 1,059 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cycloalternan-forming enzyme
UniProt: Q8Y4J2
Ligands: GLC, MG
Pockets: 8 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cycloalternan-forming enzyme	protein	1059	17% helix, 37% strand	Q8Y4J2

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 13 copies · chains A
MG · Magnesium ion · metal · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	223	0.59	0.80	35	empty
2	291	0.54	0.75	42	empty
3	185	0.53	0.78	32	GLC
4	180	0.47	0.76	21	GLC
5	83	0.43	0.80	30	empty

Compared structures

5F7U · Cycloalternan-forming enzyme from Listeria monocytogenes in complex with pentasaccharide… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8Y4J2
Elsewhere: RCSB PDB 5F7U · PDBe 5F7U · UniProt Q8Y4J2

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