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Nano-ring of cadmium ions coordinated by NVPIZZA2-S16S58

Analyse Nano-ring of cadmium ions coordinated by NVPIZZA2-S16S58 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5F53
Type
protein
Length
84 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
NVPIZZA2-S16S58
Ligands
CD, CL

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 37% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ANVPIZZA2-S16S58protein847% helix, 37% strand—

Ligands and binding sites

  • CD · Cadmium ion · metal · chains A
  • CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5F53 · Nano-ring of cadmium ions coordinated by nvPizza2-S16S58 · the same entry in another collection · chain A against A, TM-score 1.00

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