Research workbench
Crystal structure of dehydrogenase from streptomyces platensis
Analyse Crystal structure of dehydrogenase from streptomyces platensis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5F1P
- Type
- protein
- Length
- 484 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PTMO8
- UniProt
- A0A0A0UVL0
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | PTMO8 | protein | 242 | 50% helix, 17% strand | A0A0A0UVL0 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 611 | 0.68 | 0.77 | 61 | empty |
| 2 | 421 | 0.62 | 0.77 | 38 | empty |
| 3 | 103 | 0.35 | 0.74 | 18 | empty |
| 4 | 56 | 0.31 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1386 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 5F1P · Crystal Structure of Dehydrogenase from Streptomyces platensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A0UVL0
- Elsewhere: RCSB PDB 5F1P · PDBe 5F1P · UniProt A0A0A0UVL0
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