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Crystal structure of the escherichia COLI sbmc protein (aka gyrase inhibitory protein gyri, aka yeeb)

Analyse Crystal structure of the escherichia COLI sbmc protein (aka gyrase inhibitory… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JYH
Type: protein
Length: 155 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA gyrase inhibitory protein
UniProt: P33012
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA gyrase inhibitory protein	protein	155	23% helix, 40% strand	P33012

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	375	0.60	0.76	35	empty

Compared structures

1JYH · Crystal Structure of the Escherichia coli SbmC protein (AKA Gyrase Inhibitory Protein… · the same entry in another collection · chain A against A, TM-score 1.00
P33012 · AlphaFold monomer V2.0 prediction for DNA gyrase inhibitor (P33012) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P33012
Elsewhere: RCSB PDB 1JYH · PDBe 1JYH · UniProt P33012

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