Research workbench
Crystal structure of cell binding factor 2 from helicobacter pylori in complex with I2CA
Analyse Crystal structure of cell binding factor 2 from helicobacter pylori in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EZ1
- Type
- protein
- Length
- 463 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative peptidyl-prolyl cis-trans isomerase HP_0175
- EC
- 5.2.1.8
- UniProt
- P56112
- Ligands
- ICB
Structure
x-ray diffraction · 2 distinct chains · 60% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative peptidyl-prolyl cis-trans isomerase HP_0175 (EC 5.2.1.8) | protein | 231 | 60% helix, 16% strand | P56112 |
| B | Putative peptidyl-prolyl cis-trans isomerase HP_0175 (EC 5.2.1.8) | protein | 232 | 60% helix, 17% strand | P56112 |
Ligands and binding sites
- ICB · 1H-indole-2-carboxylic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 2161 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5EZ1 · Crystal Structure of Cell Binding Factor 2 from Helicobacter pylori in complex with I2CA · the same entry in another collection · chain A against A, TM-score 1.00
- P56112 · AlphaFold monomer V2.0 prediction for putative peptidyl-prolyl cis- trans isomerase… · a predicted model of the same protein · chain B against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56112
- Elsewhere: RCSB PDB 5EZ1 · PDBe 5EZ1 · UniProt P56112
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