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Crystal structure of an alkyl hyroperoxide reductase from burkholderia ambifaria

Analyse Crystal structure of an alkyl hyroperoxide reductase from burkholderia ambifaria in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ENU
Type: protein
Length: 310 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen
UniProt: B1YRI5
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen	protein	157	32% helix, 29% strand	B1YRI5
B	Alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen	protein	153	33% helix, 30% strand	B1YRI5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	113	0.47	0.79	27	empty

Interfaces

1 interface between chains.

A–B · 442 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

5ENU · Crystal structure of an alkyl hyroperoxide reductase from Burkholderia ambifaria · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B1YRI5
Elsewhere: RCSB PDB 5ENU · PDBe 5ENU · UniProt B1YRI5

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