Research workbench
Apo-form of SCO3201
Analyse Apo-form of SCO3201 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EFY
- Type
- protein
- Length
- 758 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative tetr-family transcriptional regulator
- UniProt
- Q9KYU4
- Pockets
- 10 · best druggability 0.82
Structure
x-ray diffraction · 4 distinct chains · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative tetr-family transcriptional regulator | protein | 190 | 79% helix, 0% strand | Q9KYU4 |
| B | Putative tetr-family transcriptional regulator | protein | 193 | 80% helix, 0% strand | Q9KYU4 |
| C | Putative tetr-family transcriptional regulator | protein | 197 | 78% helix, 0% strand | Q9KYU4 |
| D | Putative tetr-family transcriptional regulator | protein | 178 | 80% helix, 0% strand | Q9KYU4 |
Pockets
10 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 750 | 0.82 | 0.85 | 81 | empty |
| 2 | 446 | 0.72 | 0.82 | 56 | empty |
| 3 | 163 | 0.69 | 0.88 | 25 | empty |
| 4 | 667 | 0.69 | 0.77 | 86 | empty |
| 5 | 263 | 0.63 | 0.81 | 33 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1193 Ų buried · 18 hydrogen bonds · protein-protein
- C–D · 904 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 248 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5EFY · Apo-form of SCO3201 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KYU4
- Elsewhere: RCSB PDB 5EFY · PDBe 5EFY · UniProt Q9KYU4
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