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Crystal structure of chaetomium thermophilum raptor

Analyse Crystal structure of chaetomium thermophilum raptor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5EF5
Type: protein
Length: 2,033 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Raptor from chaetomium thermophilum
Pockets: 20 · best druggability 0.83

Structure

x-ray diffraction · 2 distinct chains · 42% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
E	Raptor from chaetomium thermophilum	protein	1004	42% helix, 15% strand	—
A	Raptor from chaetomium thermophilum	protein	1029	42% helix, 16% strand	—

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	708	0.83	0.86	127	empty
2	550	0.81	0.87	99	empty
3	1157	0.79	0.81	119	empty
4	733	0.77	0.82	94	empty
5	625	0.76	0.83	74	empty

Interfaces

1 interface between chains.

E–A · 321 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5EF5 · Crystal structure of Chaetomium thermophilum Raptor · the same entry in another collection · chain E against E, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5EF5 · PDBe 5EF5

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