Research workbench
Crystal structure of swine CD8AA homodimer
Analyse Crystal structure of swine CD8AA homodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EDX
- Type
- protein
- Length
- 228 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD8 alpha antigen
- UniProt
- A0MNZ3
- Pockets
- 4 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | CD8 alpha antigen | protein | 114 | 3% helix, 49% strand | A0MNZ3 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.48 | 0.81 | 27 | empty |
| 2 | 53 | 0.29 | 0.74 | 13 | empty |
| 3 | 65 | 0.29 | 0.73 | 14 | empty |
| 4 | 50 | 0.26 | 0.74 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1035 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5EDX · Crystal structure of swine CD8aa homodimer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0MNZ3
- Elsewhere: RCSB PDB 5EDX · PDBe 5EDX · UniProt A0MNZ3
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