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The apo crystal structure of haemoglobin receptor hpua from kingella denitrificans
Analyse The apo crystal structure of haemoglobin receptor hpua from kingella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EC6
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hpua
- UniProt
- F0EX68
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hpua | protein | 302 | 4% helix, 48% strand | F0EX68 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 139 | 0.43 | 0.76 | 25 | empty |
| 2 | 74 | 0.29 | 0.73 | 20 | empty |
Compared structures
- 5EC6 · The apo crystal structure of haemoglobin receptor HpuA from Kingella denitrificans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0EX68
- Elsewhere: RCSB PDB 5EC6 · PDBe 5EC6 · UniProt F0EX68
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