Research workbench

Maltodextrin-binding protein variant D207C/A301GS/P316C with beta- mercaptoethanol mixed disulfides

Analyse Maltodextrin-binding protein variant D207C/A301GS/P316C with beta… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JVY
Type: protein
Length: 371 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Maltodextrin-binding protein
UniProt: P02928
Ligands: GLC
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Maltodextrin-binding protein	protein	371	45% helix, 21% strand	P02928

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	304	0.71	0.85	31	GLC
2	102	0.37	0.75	19	empty
3	60	0.30	0.76	18	empty

Modifications

Observed in the structure: 2 modified (artifact).

Compared structures

1JVY · Maltodextrin-binding protein variant D207C/A301GS/P316C with beta-mercaptoethanol mixed… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02928
Elsewhere: RCSB PDB 1JVY · PDBe 1JVY · UniProt P02928

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.