Research workbench
Crystal structure of domains CD (residues 230-489) of BACOVA_02650
Analyse Crystal structure of domains CD (residues 230-489) of BACOVA_02650 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5E7H
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- IPT/TIG domain-containing protein BACOVA_02650
- UniProt
- A7LXT4
- Ligands
- NA
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | IPT/TIG domain-containing protein BACOVA_02650 | protein | 260 | 8% helix, 45% strand | A7LXT4 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A
- FMT · Formic acid · additive · 5 copies · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.49 | 0.81 | 23 | empty |
| 2 | 57 | 0.34 | 0.78 | 12 | empty |
Compared structures
- 5E7H · Crystal structure of domains CD (residues 230-489) of Bacova_02650 · the same entry in another collection · chain A against A, TM-score 1.00
- A7LXT4 · AlphaFold monomer V2.0 prediction for IPT/TIG domain-containing protein BACOVA_02650… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7LXT4
- Elsewhere: RCSB PDB 5E7H · PDBe 5E7H · UniProt A7LXT4
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