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Crystal structure of BACOVA_02651

Analyse Crystal structure of BACOVA_02651 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5E75
Type: protein
Length: 506 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd-like protein BACOVA_02651
UniProt: A7LXT5
Ligands: MG, CL
Pockets: 7 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Susd-like protein BACOVA_02651	protein	506	48% helix, 9% strand	A7LXT5

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.71	0.98	19	empty
2	50	0.68	0.97	21	EDO
3	61	0.46	0.84	19	empty
4	83	0.42	0.79	15	empty
5	84	0.41	0.79	21	empty

Compared structures

5E75 · Crystal structure of Bacova_02651 · the same entry in another collection · chain A against A, TM-score 1.00
A7LXT5 · AlphaFold monomer V2.0 prediction for susd-like protein BACOVA_02651 (A7LXT5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7LXT5
Elsewhere: RCSB PDB 5E75 · PDBe 5E75 · UniProt A7LXT5

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