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The 2.2 ångström resolution structure of bacillus subtilis LUXS/RIBOSILHOMOCYSTEINE complex
Analyse The 2.2 ångström resolution structure of bacillus subtilis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JVI
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autoinducer-2 production protein luxs
- UniProt
- O34667
- Ligands
- RHC, HCS, ZN, SO4
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autoinducer-2 production protein luxs | protein | 154 | 35% helix, 23% strand | O34667 |
Ligands and binding sites
- RHC · (2S)-2-amino-4-[[(2S,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methylsulfanyl]butanoic acid · ligand · chains A
- HCS · 2-amino-4-mercapto-butyric acid · ligand · chains A
- ZN · Zinc ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, oxidation).
Compared structures
- 1JVI · The 2.2 ångström resolution structure of bacillus subtilis LUXS/RIBOSILHOMOCYSTEINE… · the same entry in another collection · chain A against A, TM-score 1.00
- O34667 · AlphaFold monomer V2.0 prediction for S-ribosylhomocysteine lyase (O34667) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34667
- Elsewhere: RCSB PDB 1JVI · PDBe 1JVI · UniProt O34667
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