Research workbench
Wild type I-smami in the space group of C121
Analyse Wild type I-smami in the space group of C121 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5E5P
- Type
- protein
- Length
- 295 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- I-smami laglidadg meganuclease
- UniProt
- F7WD42
- Pockets
- 4 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | I-smami laglidadg meganuclease | protein | 295 | 47% helix, 21% strand | F7WD42 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.44 | 0.80 | 17 | empty |
| 2 | 113 | 0.39 | 0.75 | 18 | empty |
| 3 | 79 | 0.36 | 0.76 | 16 | PG0 |
| 4 | 57 | 0.29 | 0.75 | 15 | empty |
Compared structures
- 5E5P · Wild type I-SmaMI in the space group of C121 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F7WD42
- Elsewhere: RCSB PDB 5E5P · PDBe 5E5P · UniProt F7WD42
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