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Crystal structure of the organohalide sensing rdhr-CBDBA1625 transcriptional regulator in the 2,3-dichlorophenol bound form

Analyse Crystal structure of the organohalide sensing rdhr-CBDBA1625 transcriptional… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5E20
Type: protein
Length: 169 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional regulator, marr family
UniProt: M1R817
Ligands: 5JF
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcriptional regulator, marr family	protein	169	61% helix, 7% strand	M1R817

Ligands and binding sites

5JF · 2,3-dichlorophenol · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	815	0.68	0.74	41	5JF

Compared structures

5E20 · Crystal structure of the organohalide sensing RdhR-CbdbA1625 transcriptional regulator in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt M1R817
Elsewhere: RCSB PDB 5E20 · PDBe 5E20 · UniProt M1R817

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