Research workbench
Streptococcus agalactiae AGI/II polypeptide bspa C-terminal domain (mut)
Analyse Streptococcus agalactiae AGI/II polypeptide bspa C-terminal domain (mut) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DZ9
- Type
- protein
- Length
- 334 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bspa
- UniProt
- Q8E589
- Pockets
- 3 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bspa | protein | 334 | 12% helix, 48% strand | Q8E589 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 138 | 0.48 | 0.78 | 20 | empty |
| 2 | 77 | 0.36 | 0.77 | 18 | empty |
| 3 | 52 | 0.28 | 0.74 | 15 | empty |
Compared structures
- 5DZ9 · Streptococcus agalactiae AgI/II polypeptide BspA C-terminal domain (Mut) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8E589
- Elsewhere: RCSB PDB 5DZ9 · PDBe 5DZ9 · UniProt Q8E589
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