Research workbench
Structural basis of acyl transfer in a trans-at polyketide synthase
Analyse Structural basis of acyl transfer in a trans-at polyketide synthase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DZ7
- Type
- protein
- Length
- 281 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyketide biosynthesis protein pkse
- EC
- 2.3.1.39
- UniProt
- O34787
- Ligands
- CL
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyketide biosynthesis protein pkse (EC 2.3.1.39) | protein | 281 | 47% helix, 15% strand | O34787 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.61 | 0.80 | 34 | GOL |
Compared structures
- 5DZ7 · Structural basis of acyl transfer in a trans-at polyketide synthase · the same entry in another collection · chain A against A, TM-score 1.00
- O34787 · AlphaFold monomer V2.0 prediction for polyketide biosynthesis protein pkse (O34787) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34787
- Elsewhere: RCSB PDB 5DZ7 · PDBe 5DZ7 · UniProt O34787
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