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Solution structure of the deoxyribose HIV-1LAI initiation sequence stable dimer
Analyse Solution structure of the deoxyribose HIV-1LAI initiation sequence stable dimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JUA
- Type
- DNA
- Length
- 46 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*TP*TP*GP*CP*TP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP *GP*CP*AP*AP*G)-3'
- Pockets
- 4 · best druggability 0.51
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*TP*TP*GP*CP*TP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP *GP*CP*AP*AP*G)-3' | dna | 23 | — | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.51 | 0.80 | 12 | empty |
| 2 | 150 | 0.50 | 0.79 | 13 | empty |
| 3 | 87 | 0.33 | 0.74 | 12 | empty |
| 4 | 89 | 0.32 | 0.73 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 651 Ų buried · 58 hydrogen bonds · nucleic-nucleic
Compared structures
- 1JUA · Solution Structure of the Deoxyribose HIV-1Lai Initiation Sequence Stable Dimer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1JUA · PDBe 1JUA
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