Research workbench
T3284 loop variant of BETA1
Analyse T3284 loop variant of BETA1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DQA
- Type
- protein
- Length
- 647 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- T3284
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | T3284 | protein | 216 | 11% helix, 18% strand | — |
| C | T3284 | protein | 215 | 12% helix, 18% strand | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1115 | 0.76 | 0.79 | 102 | empty |
Interfaces
3 interfaces between chains.
- A–B · 256 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 184 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 176 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5DQA · t3284 loop variant of beta1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5DQA · PDBe 5DQA
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