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Crystal structure of unnamed thioesterase LPG2867 from legionella pneumophila, the D21A mutant
Analyse Crystal structure of unnamed thioesterase LPG2867 from legionella pneumophila… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DIO
- Type
- protein
- Length
- 239 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioesterase
- UniProt
- G8UUB5
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thioesterase | protein | 125 | 19% helix, 46% strand | G8UUB5 |
| B | Thioesterase | protein | 114 | 22% helix, 46% strand | G8UUB5 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 334 | 0.65 | 0.80 | 39 | empty |
| 2 | 101 | 0.45 | 0.78 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 495 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5DIO · Crystal structure of unnamed thioesterase lpg2867 from Legionella pneumophila, the D21A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G8UUB5
- Elsewhere: RCSB PDB 5DIO · PDBe 5DIO · UniProt G8UUB5
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