Research workbench
X-ray structure of human rbpms in complex with the RNA
Analyse X-ray structure of human rbpms in complex with the RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DET
- Type
- protein + RNA
- Length
- 194 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-binding protein with multiple splicing; RNA (5'-R(P*UP*CP*AP*CP*U)-3'); RNA…
- UniProt
- Q93062
- Ligands
- SO4
Structure
x-ray diffraction · 4 distinct chains · 24% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-binding protein with multiple splicing | protein | 91 | 24% helix, 26% strand | Q93062 |
| B | RNA-binding protein with multiple splicing | protein | 94 | 23% helix, 26% strand | Q93062 |
| Q | RNA (5'-R(P*UP*CP*AP*CP*U)-3') | rna | 5 | — | — |
| P | RNA (5'-R(*UP*CP*AP*C)-3') | rna | 4 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–B · 869 Ų buried · 16 hydrogen bonds · protein-protein
- B–Q · 566 Ų buried · 15 hydrogen bonds · protein-nucleic
- A–P · 508 Ų buried · 12 hydrogen bonds · protein-nucleic
Compared structures
- 5DET · X-ray structure of human RBPMS in complex with the RNA · the same entry in another collection · chain A against A, TM-score 1.00
- Q93062 · AlphaFold monomer V2.0 prediction for RNA-binding protein with multiple splicing (Q93062) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93062
- Elsewhere: RCSB PDB 5DET · PDBe 5DET · UniProt Q93062
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