Research workbench
Apo structure of transcriptional factor arar from bacteroides thetaiotaomicron vpi
Analyse Apo structure of transcriptional factor arar from bacteroides thetaiotaomicron… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DD4
- Type
- protein
- Length
- 221 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional regulator arar
- UniProt
- Q8AAV8
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional regulator arar | protein | 221 | 31% helix, 30% strand | Q8AAV8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.47 | 0.81 | 22 | EDO |
| 2 | 72 | 0.32 | 0.75 | 19 | empty |
| 3 | 64 | 0.31 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 5DD4 · Apo structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8AAV8
- Elsewhere: RCSB PDB 5DD4 · PDBe 5DD4 · UniProt Q8AAV8
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