Research workbench
C-terminal domain of xerd recombinase in complex with gamma domain of ftsk
Analyse C-terminal domain of xerd recombinase in complex with gamma domain of ftsk in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DCF
- Type
- protein
- Length
- 239 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine recombinase XERD,DNA translocase ftsk
- UniProt
- P0A8P9, P46889
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine recombinase XERD,DNA translocase ftsk | protein | 239 | 58% helix, 7% strand | P0A8P9, P46889 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 328 | 0.65 | 0.81 | 39 | empty |
| 2 | 56 | 0.30 | 0.75 | 13 | empty |
Compared structures
- P0A8P9 · AlphaFold monomer V2.0 prediction for tyrosine recombinase xerd (P0A8P9) · a predicted model of the same protein · chain A against A, TM-score 0.62
- P46889 · AlphaFold monomer V2.0 prediction for DNA translocase ftsk (P46889) · a predicted model of the same protein · chain A against A, TM-score 0.29
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A8P9
- Every structure of UniProt P46889
- Elsewhere: RCSB PDB 5DCF · PDBe 5DCF · UniProt P0A8P9 · UniProt P46889
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