Research workbench
Structure of colocasia esculenta agglutinin with mannose bound
Analyse Structure of colocasia esculenta agglutinin with mannose bound in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5D9Z
- Type
- protein
- Length
- 221 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tuber agglutinin
- UniProt
- R9RL27
- Ligands
- BMA, PO4
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tuber agglutinin | protein | 109 | 0% helix, 41% strand | R9RL27 |
| B | Tuber agglutinin | protein | 112 | 0% helix, 41% strand | R9RL27 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1769 Ų buried · 23 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5D9Z · Structure of Colocasia Esculenta Agglutinin with mannose bound · the same entry in another collection · chain A against A, TM-score 1.00
- R9RL27 · AlphaFold monomer V2.0 prediction for mannose-specific lectin cea (R9RL27) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt R9RL27
- Elsewhere: RCSB PDB 5D9Z · PDBe 5D9Z · UniProt R9RL27
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