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Crystal structure of a mycobacterial protein

Analyse Crystal structure of a mycobacterial protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5D6N
Type: protein
Length: 480 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acyl-CoA synthase
UniProt: A0R618
Pockets: 5 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acyl-CoA synthase	protein	480	32% helix, 25% strand	A0R618

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	304	0.55	0.75	51	empty
2	145	0.41	0.74	30	empty
3	64	0.35	0.78	17	empty
4	77	0.32	0.74	14	empty
5	74	0.32	0.74	19	empty

Compared structures

5D6N · Crystal structure of a mycobacterial protein · the same entry in another collection · chain A against A, TM-score 1.00
A0R618 · AlphaFold monomer V2.0 prediction for long-chain-fatty-acid--AMP ligase FADD32 (A0R618) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0R618
Elsewhere: RCSB PDB 5D6N · PDBe 5D6N · UniProt A0R618

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