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Structure of chaetomium thermophilum SKN7 coiled-coil domain, crystal form III

Analyse Structure of chaetomium thermophilum SKN7 coiled-coil domain, crystal form III in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5D60
Type: protein
Length: 238 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative transcription factor
UniProt: G0SB31

Structure

x-ray diffraction · 2 distinct chains · 97% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative transcription factor	protein	55	96% helix, 0% strand	G0SB31
B, C, D	Putative transcription factor	protein	61	97% helix, 0% strand	G0SB31

Interfaces

6 interfaces between chains.

B–C · 1398 Å² buried · 18 hydrogen bonds · protein-protein
A–D · 1377 Å² buried · 10 hydrogen bonds · protein-protein
C–D · 1295 Å² buried · 8 hydrogen bonds · protein-protein
A–B · 1244 Å² buried · 10 hydrogen bonds · protein-protein
B–D · 199 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5D60 · Structure of Chaetomium thermophilum Skn7 coiled-coil domain, crystal form III · the same entry in another collection · chain A against A, TM-score 1.00
G0SB31 · AlphaFold monomer V2.0 prediction for transcription factor SKN7 (G0SB31) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G0SB31
Elsewhere: RCSB PDB 5D60 · PDBe 5D60 · UniProt G0SB31

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