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Crystal structure of the 16S rRNA (ADENINE(1408)-N(1))- methyltransferase W203A mutant from catenulisporales acidiphilia

Analyse Crystal structure of the 16S rRNA (ADENINE(1408)-N(1))- methyltransferase W203A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5D1H
Type: protein
Length: 410 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: C7Q5P8
Pockets: 6 · best druggability 0.43

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	204	36% helix, 28% strand	C7Q5P8
B	Uncharacterized protein	protein	206	33% helix, 28% strand	C7Q5P8

Pockets

6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.43	0.77	25	empty
2	90	0.39	0.77	20	empty
3	109	0.39	0.75	16	empty
4	83	0.38	0.77	21	empty
5	86	0.36	0.75	18	empty

Interfaces

1 interface between chains.

A–B · 675 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

5D1H · Crystal structure of the 16S rRNA (adenine(1408)-N(1))-methyltransferase W203A mutant… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7Q5P8
Elsewhere: RCSB PDB 5D1H · PDBe 5D1H · UniProt C7Q5P8

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