Research workbench
Bacteroides thetaiotaomicron multiple inositol polyphosphate phosphatase A324D mutant
Analyse Bacteroides thetaiotaomicron multiple inositol polyphosphate phosphatase A324D… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CU7
- Type
- protein
- Length
- 792 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multiple inositol polyphosphate histidine phosphatase 1
- UniProt
- Q89YI8
- Ligands
- PO4
- Pockets
- 7 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Multiple inositol polyphosphate histidine phosphatase 1 | protein | 396 | 57% helix, 13% strand | Q89YI8 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1005 | 0.77 | 0.79 | 85 | empty |
| 2 | 486 | 0.67 | 0.78 | 52 | PO4 |
| 3 | 466 | 0.64 | 0.77 | 48 | PO4 |
| 4 | 169 | 0.59 | 0.82 | 23 | empty |
| 5 | 52 | 0.43 | 0.83 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 593 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5CU7 · Bacteroides Thetaiotaomicron Multiple Inositol Polyphosphate Phosphatase A324D Mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q89YI8
- Elsewhere: RCSB PDB 5CU7 · PDBe 5CU7 · UniProt Q89YI8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.