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Crystal structure of uncharacterized protein Q8DWV2 from streptococcus agalactiae

Analyse Crystal structure of uncharacterized protein Q8DWV2 from streptococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5CQV
Type: protein
Length: 340 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q8DWV2
Pockets: 2 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 69% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	170	69% helix, 0% strand	Q8DWV2

Ligands and binding sites

MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A, B
MRD · (4R)-2-methylpentane-2,4-diol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	603	0.83	0.88	62	MPD, MRD
2	230	0.73	0.88	26	empty

Interfaces

1 interface between chains.

A–B · 3642 Å² buried · 29 hydrogen bonds · protein-protein

Compared structures

5CQV · Crystal structure of uncharacterized protein Q8DWV2 from Streptococcus agalactiae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DWV2
Elsewhere: RCSB PDB 5CQV · PDBe 5CQV · UniProt Q8DWV2

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