Research workbench
Crystal structure of the cytoplasmic domain of the pseudomonas putida anti-sigma factor pupr
Analyse Crystal structure of the cytoplasmic domain of the pseudomonas putida… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5COS
- Type
- protein
- Length
- 230 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Siderophore-interacting protein
- UniProt
- A0A084CH09
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 4 distinct chains · 77% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Siderophore-interacting protein | protein | 56 | 77% helix, 0% strand | A0A084CH09 |
| B | Siderophore-interacting protein | protein | 55 | 80% helix, 0% strand | A0A084CH09 |
| C | Siderophore-interacting protein | protein | 58 | 78% helix, 3% strand | A0A084CH09 |
| D | Siderophore-interacting protein | protein | 61 | 75% helix, 3% strand | A0A084CH09 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.28 | 0.74 | 15 | empty |
Interfaces
4 interfaces between chains.
- A–B · 911 Ų buried · 3 hydrogen bonds · protein-protein
- C–D · 688 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 384 Ų buried · 1 hydrogen bond · protein-protein
- B–D · 224 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5COS · Crystal Structure of the Cytoplasmic Domain of the Pseudomonas putida Anti-sigma Factor… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A084CH09
- Elsewhere: RCSB PDB 5COS · PDBe 5COS · UniProt A0A084CH09
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