Research workbench
Crystal structure of uncharacterized protein Q187F5 from clostridium difficile 630
Analyse Crystal structure of uncharacterized protein Q187F5 from clostridium difficile… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5COM
- Type
- protein
- Length
- 342 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative conjugative transposon protein TN1549-like, CTN5- ORF2
- UniProt
- Q187F5
- Ligands
- NA
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative conjugative transposon protein TN1549-like, CTN5- ORF2 | protein | 171 | 66% helix, 0% strand | Q187F5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 255 | 0.53 | 0.76 | 26 | empty |
| 2 | 102 | 0.37 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 278 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5COM · Crystal structure of Uncharacterized Protein Q187F5 from Clostridium difficile 630 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q187F5
- Elsewhere: RCSB PDB 5COM · PDBe 5COM · UniProt Q187F5
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