Research workbench
E. COLI mazf E24A form III
Analyse E. COLI mazf E24A form III in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CKD
- Type
- protein
- Length
- 220 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoribonuclease mazf
- EC
- 3.1.27.-
- UniProt
- P0AE70
- Ligands
- NA
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoribonuclease mazf (EC 3.1.27.-) | protein | 109 | 23% helix, 32% strand | P0AE70 |
| B | Endoribonuclease mazf (EC 3.1.27.-) | protein | 111 | 23% helix, 32% strand | P0AE70 |
Ligands and binding sites
- NA · Sodium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 399 | 0.57 | 0.75 | 36 | empty |
| 2 | 73 | 0.41 | 0.79 | 16 | empty |
| 3 | 69 | 0.34 | 0.76 | 14 | empty |
| 4 | 80 | 0.32 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 944 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AE70
- Elsewhere: RCSB PDB 5CKD · PDBe 5CKD · UniProt P0AE70
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