Research workbench
Crystal structure of Fab D3H44
Analyse Crystal structure of Fab D3H44 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JPT
- Type
- protein
- Length
- 425 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immunoglobulin Fab D3H44, light chain; Immunoglobulin Fab D3H44, heavy chain
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | Immunoglobulin Fab D3H44, light chain | protein | 213 | 6% helix, 52% strand | — |
| H | Immunoglobulin Fab D3H44, heavy chain | protein | 212 | 9% helix, 54% strand | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 619 | 0.62 | 0.74 | 61 | empty |
| 2 | 78 | 0.31 | 0.73 | 23 | empty |
| 3 | 58 | 0.27 | 0.74 | 14 | empty |
| 4 | 58 | 0.25 | 0.72 | 13 | empty |
Interfaces
1 interface between chains.
- L–H · 1683 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1JPT · Crystal Structure of Fab D3H44 · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1JPT · PDBe 1JPT
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