Research workbench
C-terminal domain of the R-type pyocin baseplate protein PA0618
Analyse C-terminal domain of the R-type pyocin baseplate protein PA0618 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CES
- Type
- protein
- Length
- 182 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PA0618
- UniProt
- G3XCX5
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | PA0618 | protein | 91 | 33% helix, 36% strand | G3XCX5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.39 | 0.76 | 19 | empty |
| 2 | 114 | 0.37 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 557 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 5CES · C-terminal domain of the R-type pyocin baseplate protein PA0618 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3XCX5
- Elsewhere: RCSB PDB 5CES · PDBe 5CES · UniProt G3XCX5
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