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BD3460 immunity protein from bdellovibrio bacteriovorus

Analyse BD3460 immunity protein from bdellovibrio bacteriovorus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5CEA
Type: protein
Length: 967 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: BD3460
UniProt: Q6MHS9
Pockets: 9 · best druggability 0.77

Structure

x-ray diffraction · 4 distinct chains · 55% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	BD3460	protein	193	54% helix, 1% strand	Q6MHS9
C	BD3460	protein	196	55% helix, 1% strand	Q6MHS9
B	BD3460	protein	195	54% helix, 1% strand	Q6MHS9
E	BD3460	protein	190	55% helix, 1% strand	Q6MHS9

Pockets

9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1039	0.77	0.79	102	empty
2	448	0.66	0.78	53	empty
3	172	0.58	0.82	26	empty
4	124	0.48	0.79	20	empty
5	81	0.42	0.79	23	empty

Interfaces

5 interfaces between chains.

A–B · 571 Å² buried · 10 hydrogen bonds · protein-protein
D–C · 554 Å² buried · 7 hydrogen bonds · protein-protein
A–D · 107 Å² buried · 0 hydrogen bonds · protein-protein
A–C · 93 Å² buried · 0 hydrogen bonds · protein-protein
A–E · 72 Å² buried · 1 hydrogen bond · protein-protein

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6MHS9
Elsewhere: RCSB PDB 5CEA · PDBe 5CEA · UniProt Q6MHS9

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