Research workbench
N-terminal domain of fact complex subunit SPT16 from cicer arietinum (chickpea)
Analyse N-terminal domain of fact complex subunit SPT16 from cicer arietinum (chickpea) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CE6
- Type
- protein
- Length
- 426 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fact-SPT16
- Ligands
- K, NA
- Pockets
- 6 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fact-SPT16 | protein | 426 | 42% helix, 23% strand | — |
Ligands and binding sites
- K · Potassium ion · metal · chains A
- NA · Sodium ion · metal · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 133 | 0.62 | 0.86 | 28 | ACT |
| 2 | 99 | 0.61 | 0.87 | 16 | empty |
| 3 | 124 | 0.45 | 0.77 | 25 | empty |
| 4 | 51 | 0.39 | 0.81 | 13 | empty |
| 5 | 88 | 0.37 | 0.76 | 22 | ACT |
Compared structures
- 5CE6 · N-terminal domain of FACT complex subunit SPT16 from Cicer arietinum (chickpea) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5CE6 · PDBe 5CE6
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