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Crystal structure of recombinant pll lectin complexed with L-fucose from photorhabdus luminescens at 1.75 a resolution

Analyse Crystal structure of recombinant pll lectin complexed with L-fucose from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5C9P
Type: protein
Length: 354 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pll lectin
UniProt: Q7N8J0
Ligands: FUC
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pll lectin	protein	354	0% helix, 47% strand	Q7N8J0

Ligands and binding sites

FUC · alpha-L-fucopyranose · sugar · 3 copies · chains A
GOL · Glycerol · additive · 10 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	814	0.79	0.82	45	empty
2	73	0.33	0.76	18	empty
3	57	0.32	0.77	17	GOL

Compared structures

5C9P · Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7N8J0
Elsewhere: RCSB PDB 5C9P · PDBe 5C9P · UniProt Q7N8J0

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