Research workbench
The structure of aspergillus oryzae beta-glucuronidase
Analyse The structure of aspergillus oryzae beta-glucuronidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5C70
- Type
- protein
- Length
- 1,172 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucuronidase
- Pockets
- 11 · best druggability 0.87
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucuronidase | protein | 588 | 20% helix, 34% strand | — |
| B | Glucuronidase | protein | 584 | 20% helix, 32% strand | — |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1192 | 0.87 | 0.88 | 116 | empty |
| 2 | 1096 | 0.75 | 0.78 | 131 | empty |
| 3 | 68 | 0.75 | 0.99 | 18 | empty |
| 4 | 64 | 0.73 | 0.98 | 18 | empty |
| 5 | 284 | 0.57 | 0.77 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 1854 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5C70 · The structure of Aspergillus oryzae beta-glucuronidase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5C70 · PDBe 5C70
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.