Research workbench
Crystal structure of murine olfactory marker protein in spacegroup P43212
Analyse Crystal structure of murine olfactory marker protein in spacegroup P43212 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JOD
- Type
- protein
- Length
- 320 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Olfactory marker protein
- UniProt
- Q64288
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Olfactory marker protein | protein | 160 | 24% helix, 36% strand | Q64288 |
Ligands and binding sites
- ZN · Zinc ion · metal · 22 copies · chains A, B
- CAC · Cacodylate ion · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 193 | 0.47 | 0.75 | 40 | ZN, CAC |
| 2 | 53 | 0.42 | 0.83 | 16 | ZN |
Interfaces
1 interface between chains.
- A–B · 430 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 1JOD · Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 · the same entry in another collection · chain A against A, TM-score 1.00
- Q64288 · AlphaFold monomer V2.0 prediction for olfactory marker protein (Q64288) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q64288
- Elsewhere: RCSB PDB 1JOD · PDBe 1JOD · UniProt Q64288
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