Research workbench
Ferredoxin-like domain of nucleoporin NUP54 bound to a nanobody
Analyse Ferredoxin-like domain of nucleoporin NUP54 bound to a nanobody in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5C2U
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nanobody; NUP54
- UniProt
- K9ZTJ6
- Pockets
- 2 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Nanobody | protein | 124 | 14% helix, 49% strand | — |
| A | NUP54 | protein | 116 | 38% helix, 32% strand | K9ZTJ6 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.33 | 0.77 | 13 | empty |
| 2 | 56 | 0.32 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- B–A · 1131 Ų buried · 16 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K9ZTJ6
- Elsewhere: RCSB PDB 5C2U · PDBe 5C2U · UniProt K9ZTJ6
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