Research workbench
Structure of HI1333, a hypothetical protein from haemophilus influenzae with structural similarity to RNA-binding proteins
Analyse Structure of HI1333, a hypothetical protein from haemophilus influenzae with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JO0
- Type
- protein
- Length
- 193 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein HI1333
- UniProt
- P71376
- Pockets
- 1 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein HI1333 | protein | 97 | 41% helix, 23% strand | P71376 |
| B | Hypothetical protein HI1333 | protein | 96 | 42% helix, 23% strand | P71376 |
Ligands and binding sites
- GOL · Glycerol · additive · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.79 | 0.97 | 24 | GOL |
Interfaces
1 interface between chains.
- A–B · 716 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 1JO0 · Structure of HI1333, a Hypothetical Protein from Haemophilus influenzae with Structural… · the same entry in another collection · chain A against A, TM-score 1.00
- P71376 · AlphaFold monomer V2.0 prediction for RNA-binding protein HI_1333 (P71376) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71376
- Elsewhere: RCSB PDB 1JO0 · PDBe 1JO0 · UniProt P71376
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