Research workbench
Crystal structure of the sodium proton antiporter napa in inward- facing conformation
Analyse Crystal structure of the sodium proton antiporter napa in inward- facing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5BZ2
- Type
- protein
- Length
- 384 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NA(+)/H(+) antiporter
- UniProt
- Q72IM4
- Pockets
- 7 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NA(+)/H(+) antiporter | protein | 384 | 74% helix, 0% strand | Q72IM4 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 551 | 0.72 | 0.80 | 51 | empty |
| 2 | 121 | 0.53 | 0.81 | 27 | empty |
| 3 | 150 | 0.46 | 0.76 | 22 | empty |
| 4 | 64 | 0.46 | 0.82 | 17 | empty |
| 5 | 128 | 0.46 | 0.77 | 27 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5BZ2 · Crystal structure of the sodium proton antiporter napa in inward-facing conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72IM4
- Elsewhere: RCSB PDB 5BZ2 · PDBe 5BZ2 · UniProt Q72IM4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.