Research workbench
Crystal structure of the RNA-binding domain of yeast PUF5P bound to SMX2 RNA
Analyse Crystal structure of the RNA-binding domain of yeast PUF5P bound to SMX2 RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5BYM
- Type
- protein + RNA
- Length
- 372 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Suppressor protein MPT5; RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3')
- UniProt
- P39016
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Suppressor protein MPT5 | protein | 363 | 75% helix, 0% strand | P39016 |
| C | RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3') | rna | 9 | — | — |
Interfaces
1 interface between chains.
- A–C · 1413 Ų buried · 51 hydrogen bonds · protein-nucleic
Compared structures
- 5BYM · Crystal structure of the RNA-binding domain of yeast Puf5p bound to SMX2 RNA · the same entry in another collection · chain A against A, TM-score 1.00
- P39016 · AlphaFold monomer V2.0 prediction for suppressor protein MPT5 (P39016) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39016
- Elsewhere: RCSB PDB 5BYM · PDBe 5BYM · UniProt P39016
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