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Connector protein from bacteriophage PHI29

Analyse Connector protein from bacteriophage PHI29 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JNB
Type: protein
Length: 3,084 residues
Chains: 12
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Upper collar protein
UniProt: P04332
Pockets: 20 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L	Upper collar protein	protein	257	38% helix, 12% strand	P04332

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	891	0.78	0.81	82	empty
2	580	0.71	0.79	72	empty
3	573	0.71	0.79	68	empty
4	414	0.71	0.82	60	empty
5	550	0.71	0.80	61	empty

Interfaces

24 interfaces between chains.

C–D · 3162 Å² buried · 41 hydrogen bonds · protein-protein
F–G · 3138 Å² buried · 38 hydrogen bonds · protein-protein
I–J · 3079 Å² buried · 31 hydrogen bonds · protein-protein
J–K · 3070 Å² buried · 30 hydrogen bonds · protein-protein
A–L · 3047 Å² buried · 29 hydrogen bonds · protein-protein

Compared structures

1JNB · Connector protein from bacteriophage PHI29 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04332
Elsewhere: RCSB PDB 1JNB · PDBe 1JNB · UniProt P04332

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