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Crystal structure of L124D STARD4

Analyse Crystal structure of L124D STARD4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5BRL
Type: protein
Length: 420 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Star-related lipid transfer protein 4
UniProt: Q99JV5
Pockets: 5 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Star-related lipid transfer protein 4	protein	210	28% helix, 40% strand	Q99JV5

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	225	0.81	0.94	41	empty
2	213	0.80	0.94	39	empty
3	86	0.38	0.76	14	empty
4	65	0.35	0.77	12	empty
5	91	0.35	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 417 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

5BRL · Crystal Structure of L124D STARD4 · the same entry in another collection · chain A against A, TM-score 1.00
Q99JV5 · AlphaFold monomer V2.0 prediction for star-related lipid transfer protein 4 (Q99JV5) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99JV5
Elsewhere: RCSB PDB 5BRL · PDBe 5BRL · UniProt Q99JV5

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