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Crystal structure of the V-region of streptococcus mutans antigen I/II

Analyse Crystal structure of the V-region of streptococcus mutans antigen I/II in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JMM
Type: protein
Length: 377 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein I/II V-region
UniProt: P11657
Ligands: NA
Pockets: 1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein I/II V-region	protein	377	18% helix, 33% strand	P11657

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	491	0.66	0.78	64	empty

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

1JMM · Crystal structure of the V-region of Streptococcus mutans antigen I/II · the same entry in another collection · chain A against A, TM-score 1.00
P11657 · AlphaFold monomer V2.0 prediction for major cell-surface adhesin pac (P11657) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11657
Elsewhere: RCSB PDB 1JMM · PDBe 1JMM · UniProt P11657

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